After the cut scene where you first meet Ocelot, knife (or shoot if you have the Patriot) him to death. Once you kill him the game over screen will pop-up and say "OCELOT IS DEAD." Cambell will then yell at Snake for creating a time paradox.
During a cut scene, if you see the name of the character, the name in the parentheses is the voice actor. If you hit O, the name will change to the name of the character's motion capture actor.
If you look around in the military bases throughout the game (Groznyj Grad, Graniny Gorki, etc.) you can find several modern day gaming magazines on tables, including EGM, GMR, and a few others. Shoot these magazines with a weapon and they will open to a page about Snake Eater. Shoot them again and they will flip to the back cover.
When entering "Graniny Gorki Lab, 1F" (An area in which you must wear the scientist disguise), interrogate the first guard you see in the lobby. The 3rd time you interrogate him, he'll reveal a password for Metal Gear Acid: "J E H U T Y"
Similar to making Snake spew, when you're escorting Eva to the lake, go into the cure option in the Survival Viewer to look at Eva and then use the analog sticks to spin her around several times. When you resume gameplay, Eva will vomit. Repeat this enough times and she will complain about stomach cramps and say other funny comments but this will also diminish her stamina quicker.
After your meeting with Granin, his door will become locked to you but you can still listen to him inside his office. After a few minutes he will start mumbling some curious things while half asleep.
In the office of Granin, there are models of things from other games Hideo Kojima Made. There is a model of Metal Gear Rex from Metal Gear Solid 1, A model of Metal Gear Ray from metal gear solid 2, and a model of Jehuty from Zone of the enders 1 and/or 2.
After being captured and waking up in the cell, throw back the food 3 times to see the scene where the soldier tells you his and his sons name (Johnny). Now wait a few minutes, Johnny will bend over, hold his stomach and will then run to the toilet. As a bonus, he will say some hilarious sentences like "Wow, that's a record!" or "Will that even flush?"
During the intro scene for Operation Snake Eater, you have the opportunity to press R1 to view part of the scene through Snake's view (the interior of the cockpit). When you do so, if you look all the way up (past all the instruments), you'll be able to see a poster of Yumi Kikuchi, a Japanese voice actress who had parts in Comic Party, Mahoromatic, Kakyuusei, and other shows.
After Volgin leaves the room after torturing you, Snake and Eva will be alone when the R1 button is prompted you can see some one behind with a board and a Codec number writen on it when your in the Cell call it and It will say "The door is open now".
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John Doe